Tooling

Pedigree Tools

Pedigree-tools is a library for supporting the conversion of pedigree data between various file formats.

It can currently support importing from the following formats:

  • PED/Linkage

  • GEDCOM (Cyrillic)

  • BOADICEA

In can currently export into the following formats:

  • PED/Linkage

This tool is available at the following GitHub repository: https://github.com/GA4GH-Pedigree-Standard/pedigree-tools

Pedigree Validator

Pedigree Validator is a simple command line application that shows how validation of a FHIR pedigree file can be implemented using the HAPI FHIR libraries and the artifacts produced by the FHIR implementation guide.

It also shows how an OWL reasoner can be used to implement additional validation based on the KIN ontology.

The application is available at the following GitHub repository: https://github.com/GA4GH-Pedigree-Standard/pedigree-validator